Index

A

add_region_based_on_range() (in module antipasti.utils.explaining_utils) antibody_sequence_identity() (in module antipasti.utils.biology_utils) antigen_identity() (in module antipasti.utils.biology_utils) antipasti module ANTIPASTI (class in antipasti.model.model) antipasti.model module antipasti.model.model module antipasti.preprocessing module

antipasti.preprocessing.preprocessing module antipasti.utils module antipasti.utils.biology_utils module antipasti.utils.explaining_utils module antipasti.utils.generic_utils module antipasti.utils.torch_utils module

C

check_train_test_identity() (in module antipasti.utils.biology_utils) clean_df() (antipasti.preprocessing.preprocessing.Preprocessing method) compute_region_importance() (in module antipasti.utils.explaining_utils)

compute_residue_importance() (in module antipasti.utils.explaining_utils) compute_umap() (in module antipasti.utils.explaining_utils) create_test_set() (in module antipasti.utils.torch_utils)

E

extract_mean_region_lengths() (in module antipasti.utils.biology_utils)

F

forward() (antipasti.model.model.ANTIPASTI method)

G

generate_fv_pdb() (antipasti.preprocessing.preprocessing.Preprocessing method) generate_maps() (antipasti.preprocessing.preprocessing.Preprocessing method) generate_masked_image() (antipasti.preprocessing.preprocessing.Preprocessing method) get_colours_ag_type() (in module antipasti.utils.explaining_utils) get_lists_of_lengths() (antipasti.preprocessing.preprocessing.Preprocessing method)

get_maps_of_interest() (in module antipasti.utils.explaining_utils) get_max_min_chains() (antipasti.preprocessing.preprocessing.Preprocessing method) get_output_representations() (in module antipasti.utils.explaining_utils) get_sequence() (in module antipasti.utils.biology_utils) get_test_contribution() (in module antipasti.utils.explaining_utils)

I

initialisation() (antipasti.preprocessing.preprocessing.Preprocessing method)

L

l1_regularization_loss() (antipasti.model.model.ANTIPASTI method) load_checkpoint() (in module antipasti.utils.torch_utils)

load_test_image() (antipasti.preprocessing.preprocessing.Preprocessing method) load_training_images() (antipasti.preprocessing.preprocessing.Preprocessing method)

M

module antipasti antipasti.model antipasti.model.model antipasti.preprocessing antipasti.preprocessing.preprocessing antipasti.utils antipasti.utils.biology_utils antipasti.utils.explaining_utils antipasti.utils.generic_utils antipasti.utils.torch_utils

P

plot_map_with_regions() (in module antipasti.utils.explaining_utils) plot_region_importance() (in module antipasti.utils.explaining_utils)

plot_residue_importance() (in module antipasti.utils.explaining_utils) plot_umap() (in module antipasti.utils.explaining_utils) Preprocessing (class in antipasti.preprocessing.preprocessing)

R

remove_abc() (in module antipasti.utils.generic_utils)

remove_nanobodies() (in module antipasti.utils.biology_utils)

S

save_checkpoint() (in module antipasti.utils.torch_utils)

T

training_routine() (in module antipasti.utils.torch_utils)

training_step() (in module antipasti.utils.torch_utils)